RIC: Research Interest Comparator

Van Anken, Eelco, Ph.D.
Affiliation: UCSF
Email: evananken@mac.com
Home Page: not provided
New This Month | New This Year | Abstract | Selected Publications | RIC Statistics Results - FULL MEDLINE:

[Involvement of unfolded protein responses in neurodegeneration]
Takashi Kudo
Nihon Shinkei Seishin Yakurigaku Zasshi 2003 Jun; 23(3)105-9.

Score: 0.988
The unfolded protein response--a stress signaling pathway of the endoplasmic reticulum.
Xiaohua Shen ... Randal J Kaufman
J Chem Neuroanat 2004 Sep; 28(1-2)79-92.

Score: 0.976
The unfolded protein response is involved in the pathology of Alzheimer's disease.
Takashi Kudo ... Masatoshi Takeda
Ann N Y Acad Sci 2002 Nov; 977()349-55.

Score: 0.974
The physiological unfolded protein response in the thyroid epithelial cells.
Ernest Sargsyan ... Souren Mkrtchian
Biochem Biophys Res Commun 2004 Sep; 322(2)570-6.

Score: 0.963
From acute ER stress to physiological roles of the Unfolded Protein Response.
J Wu ... R J Kaufman
Cell Death Differ 2006 Mar; 13(3)374-84.

Score: 0.913
Cerebral ischemia and the unfolded protein response.
Donald J DeGracia ... Heather L Montie
J Neurochem 2004 Oct; 91(1)1-8.

Score: 0.910
Activation of mammalian unfolded protein response is compatible with the quality control system operating in the endoplasmic reticulum.
Satomi Nadanaka ... Kazutoshi Mori
Mol Biol Cell 2004 Jun; 15(6)2537-48.

Score: 0.904
The unfolded protein response: a stress signaling pathway critical for health and disease.
Kezhong Zhang ... Randal J Kaufman
Neurology 2006 Jan; 66(2 Suppl 1)S102-9.

Score: 0.892
The mammalian unfolded protein response.
Martin Schröder ... Randal J Kaufman
Annu Rev Biochem 2005 ; 74()739-89.

Score: 0.886
ER stress signaling by regulated splicing: IRE1/HAC1/XBP1.
Sung Hoon Back ... Randal J Kaufman
Methods 2005 Apr; 35(4)395-416.

Score: 0.875
ER stress and the unfolded protein response.
Martin Schröder ... Randal J Kaufman
Mutat Res 2005 Jan; 569(1-2)29-63.

Score: 0.873
Protein folding in the endoplasmic reticulum and the unfolded protein response.
K Zhang ... R J Kaufman
Handb Exp Pharmacol 2006 ; (172)69-91.

Score: 0.870
On the mechanism of sensing unfolded protein in the endoplasmic reticulum.
Joel J Credle ... Peter Walter
Proc Natl Acad Sci U S A 2005 Dec; 102(52)18773-84.

Score: 0.866
Divergent roles of IRE1alpha and PERK in the unfolded protein response.
Martin Schröder ... Randal J Kaufman
Curr Mol Med 2006 Feb; 6(1)5-36.

Score: 0.865
PERK mediates cell-cycle exit during the mammalian unfolded protein response.
J W Brewer ... J A Diehl
Proc Natl Acad Sci U S A 2000 Nov; 97(23)12625-30.

Score: 0.862
Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradation.
K J Travers ... P Walter
Cell 2000 Apr; 101(3)249-58.

Score: 0.852
FAD-linked presenilin-1 mutants impede translation regulation under ER stress.
Yuka Yasuda ... Masatoshi Takeda
Biochem Biophys Res Commun 2002 Aug; 296(2)313-8.

Score: 0.849
The cargo receptor ERGIC-53 is a target of the unfolded protein response.
Beat Nyfeler ... Hans-Peter Hauri
Biochem Biophys Res Commun 2003 May; 304(4)599-604.

Score: 0.848
A trip to the ER: coping with stress.
D Thomas Rutkowski ... Randal J Kaufman
Trends Cell Biol 2004 Jan; 14(1)20-8.

Score: 0.845
Complementary signaling pathways regulate the unfolded protein response and are required for C. elegans development.
X Shen ... R J Kaufman
Cell 2001 Dec; 107(7)893-903.

Score: 0.845
Evidence for the intimate relationship between vesicle budding from the ER and the unfolded protein response.
Miyuki Sato ... Akihiko Nakano
Biochem Biophys Res Commun 2002 Aug; 296(3)560-7.

Score: 0.843
Ligand-independent dimerization activates the stress response kinases IRE1 and PERK in the lumen of the endoplasmic reticulum.
C Y Liu ... R J Kaufman
J Biol Chem 2000 Aug; 275(32)24881-5.

Score: 0.840
Endoplasmic reticulum dysfunction in brain pathology: critical role of protein synthesis.
Wulf Paschen
Curr Neurovasc Res 2004 Apr; 1(2)173-81.

Score: 0.836
IRE1 couples endoplasmic reticulum load to secretory capacity by processing the XBP-1 mRNA.
Marcella Calfon ... David Ron
Nature 2002 Jan; 415(6867)92-6.

Score: 0.815
Rapid activation of glycogen phosphorylase by the endoplasmic reticulum unfolded protein response.
Arvind Gill ... Mark A Lehrman
J Biol Chem 2002 Nov; 277(47)44747-53.

Score: 0.814
Activation of an unfolded protein response during differentiation of antibody-secreting B cells.
Jennifer N Gass ... Joseph W Brewer
J Biol Chem 2002 Dec; 277(50)49047-54.

Score: 0.802
[The regulation of unfolded protein response by OASIS, a transmembrane bZIP transcription factor, in astrocytes]
Kazunori Imaizumi ... Masaya Tohyama
Nippon Yakurigaku Zasshi 2004 Dec; 124(6)383-90.

Score: 0.799
JAB1 participates in unfolded protein responses by association and dissociation with IRE1.
Kayoko Oono ... Masaya Tohyama
Neurochem Int 2004 Oct; 45(5)765-72.

Score: 0.797
Dysfunction of the unfolded protein response during global brain ischemia and reperfusion.
Rita Kumar ... Donald J DeGracia
J Cereb Blood Flow Metab 2003 Apr; 23(4)462-71.

Score: 0.787
Genetic evidence for a role of BiP/Kar2 that regulates Ire1 in response to accumulation of unfolded proteins.
Yukio Kimata ... Kenji Kohno
Mol Biol Cell 2003 Jun; 14(6)2559-69.

Score: 0.784
Oligomerization and phosphorylation of the Ire1p kinase during intracellular signaling from the endoplasmic reticulum to the nucleus.
C E Shamu ... P Walter
EMBO J 1996 Jun; 15(12)3028-39.

Score: 0.784
Up-regulation of GRP78 and antiapoptotic signaling in murine peritoneal macrophages exposed to insulin.
Uma Kant Misra ... Salvatore Vincent Pizzo
J Leukoc Biol 2005 Jul; 78(1)187-94.

Score: 0.784
Transcriptional and translational control in the Mammalian unfolded protein response.
Heather P Harding ... David Ron
Annu Rev Cell Dev Biol 2002 ; 18()575-99.

Score: 0.782
ER chaperone functions during normal and stress conditions.
Yanjun Ma ... Linda M Hendershot
J Chem Neuroanat 2004 Sep; 28(1-2)51-65.

Score: 0.782
Unfolded protein response followed by induction of cell death in cultured tobacco cells treated with tunicamycin.
Yuji Iwata ... Nozomu Koizumi
Planta 2005 Mar; 220(5)804-7.

Score: 0.778
Endoplasmic reticulum signaling as a determinant of recombinant protein expression.
Renata E Cudna ... Alan J Dickson
Biotechnol Bioeng 2003 Jan; 81(1)56-65.

Score: 0.777
Endoplasmic reticulum: a primary target in various acute disorders and degenerative diseases of the brain.
Wulf Paschen
Cell Calcium 2003 Oct-Nov; 34(4-5)365-83.

Score: 0.772
XBP1: a link between the unfolded protein response, lipid biosynthesis, and biogenesis of the endoplasmic reticulum.
Rungtawan Sriburi ... Joseph W Brewer
J Cell Biol 2004 Oct; 167(1)35-41.

Score: 0.772
The unfolded protein response and Alzheimer's disease.
K Imaizumi ... M Tohyama
Biochim Biophys Acta 2001 May; 1536(2-3)85-96.

Score: 0.771
Aspects of gene regulation during the UPR in human cells.
C Benedetti ... A Cabibbo
Biochem Biophys Res Commun 2000 Nov; 278(3)530-6.

Score: 0.770
Genomic analysis of the unfolded protein response in Arabidopsis shows its connection to important cellular processes.
Immaculada M Martínez ... Maarten J Chrispeels
Plant Cell 2003 Feb; 15(2)561-76.

Score: 0.769
ER stress response: getting the UPR hand on misfolded proteins.
R Y Hampton
Curr Biol 2000 Jul; 10(14)R518-21.

Score: 0.765
A role for presenilin-1 in nuclear accumulation of Ire1 fragments and induction of the mammalian unfolded protein response.
M Niwa ... P Walter
Cell 1999 Dec; 99(7)691-702.

Score: 0.763
Zinc and the Msc2 zinc transporter protein are required for endoplasmic reticulum function.
Charissa D Ellis ... David J Eide
J Cell Biol 2004 Aug; 166(3)325-35.

Score: 0.754
A novel mechanism for regulating activity of a transcription factor that controls the unfolded protein response.
J S Cox ... P Walter
Cell 1996 Nov; 87(3)391-404.

Score: 0.753
Cataracts: role of the unfolded protein response.
Toshimichi Shinohara ... Michael L Mulhern
Med Hypotheses 2006 ; 66(2)365-70.

Score: 0.752
ER signaling in unfolded protein response.
Masayuki Kaneko ... Yasuyuki Nomura
Life Sci 2003 Dec; 74(2-3)199-205.

Score: 0.750
Mif1: a missing link between the unfolded protein response pathway and ER-associated protein degradation?
T van Laar ... C Terleth
Curr Protein Pept Sci 2001 Jun; 2(2)169-90.

Score: 0.748
Enlargement of the endoplasmic reticulum membrane in Saccharomyces cerevisiae is not necessarily linked to the unfolded protein response via Ire1p.
A K Stroobants ... H F Tabak
FEBS Lett 1999 Jun; 453(1-2)210-4.

Score: 0.747
The endoribonuclease activity of mammalian IRE1 autoregulates its mRNA and is required for the unfolded protein response.
W Tirasophon ... R J Kaufman
Genes Dev 2000 Nov; 14(21)2725-36.

Score: 0.746
Deletion of yeast p24 genes activates the unfolded protein response.
W J Belden ... C Barlowe
Mol Biol Cell 2001 Apr; 12(4)957-69.

Score: 0.746
The unfolded protein response regulates glutamate receptor export from the endoplasmic reticulum.
Jaegal Shim ... Christopher Rongo
Mol Biol Cell 2004 Nov; 15(11)4818-28.

Score: 0.744
Herp is dually regulated by both the endoplasmic reticulum stress-specific branch of the unfolded protein response and a branch that is shared with other cellular stress pathways.
Yanjun Ma ... Linda M Hendershot
J Biol Chem 2004 Apr; 279(14)13792-9.

Score: 0.740
Gcn4p and novel upstream activating sequences regulate targets of the unfolded protein response.
Christopher K Patil ... Peter Walter
PLoS Biol 2004 Aug; 2(8)E246.

Score: 0.736
Regulation of the dolichol pathway in human fibroblasts by the endoplasmic reticulum unfolded protein response.
W T Doerrler ... M A Lehrman
Proc Natl Acad Sci U S A 1999 Nov; 96(23)13050-5.

Score: 0.735
Intracellular signaling from the endoplasmic reticulum to the nucleus.
R Chapman ... P Walter
Annu Rev Cell Dev Biol 1998 ; 14()459-85.

Score: 0.734
The unfolded protein response: a novel component of the hypoxic stress response in tumors.
Douglas E Feldman ... Albert C Koong
Mol Cancer Res 2005 Nov; 3(11)597-605.

Score: 0.732
Tumor necrosis factor alpha (TNFalpha) induces the unfolded protein response (UPR) in a reactive oxygen species (ROS)-dependent fashion, and the UPR counteracts ROS accumulation by TNFalpha.
Xin Xue ... Hiroyasu Nakano
J Biol Chem 2005 Oct; 280(40)33917-25.

Score: 0.731
Genetic interactions due to constitutive and inducible gene regulation mediated by the unfolded protein response in C. elegans.
Xiaohua Shen ... Randal J Kaufman
PLoS Genet 2005 Sep; 1(3)e37.

Score: 0.728
Induction of neuronal death by ER stress in Alzheimer's disease.
Taiichi Katayama ... Masaya Tohyama
J Chem Neuroanat 2004 Sep; 28(1-2)67-78.

Score: 0.724
Disturbed activation of endoplasmic reticulum stress transducers by familial Alzheimer's disease-linked presenilin-1 mutations.
T Katayama ... M Tohyama
J Biol Chem 2001 Nov; 276(46)43446-54.

Score: 0.722
Endoplasmic reticulum stress response and neurodegeneration.
Wulf Paschen ... Thorsten Mengesdorf
Cell Calcium 2005 Sep-Oct; 38(3-4)409-15.

Score: 0.721
Autoregulation of the HAC1 gene is required for sustained activation of the yeast unfolded protein response.
Naoki Ogawa ... Kazutoshi Mori
Genes Cells 2004 Feb; 9(2)95-104.

Score: 0.718
Yeast unfolded protein response pathway regulates expression of genes for anti-oxidative stress and for cell surface proteins.
Yukio Kimata ... Kenji Kohno
Genes Cells 2006 Jan; 11(1)59-69.

Score: 0.716
OASIS, a CREB/ATF-family member, modulates UPR signalling in astrocytes.
Shinichi Kondo ... Kazunori Imaizumi
Nat Cell Biol 2005 Feb; 7(2)186-94.

Score: 0.716
A role for the unfolded protein response in optimizing antibody secretion.
Kathryn E Gunn ... Joseph W Brewer
Mol Immunol 2004 Jul; 41(9)919-27.

Score: 0.709
Extension of lipid-linked oligosaccharides is a high-priority aspect of the unfolded protein response: endoplasmic reticulum stress in Type I congenital disorder of glycosylation fibroblasts.
Jie Shang ... Mark A Lehrman
Glycobiology 2002 May; 12(5)307-17.

Score: 0.708
Role of the unfolded protein response pathway in secretory stress and regulation of INO1 expression in Saccharomyces cerevisiae.
Hak J Chang ... Susan A Henry
Genetics 2004 Dec; 168(4)1899-913.

Score: 0.708
Distinct roles of activating transcription factor 6 (ATF6) and double-stranded RNA-activated protein kinase-like endoplasmic reticulum kinase (PERK) in transcription during the mammalian unfolded protein response.
Tetsuya Okada ... Kazutoshi Mori
Biochem J 2002 Sep; 366(Pt 2)585-94.

Score: 0.707
The unfolded protein response regulates multiple aspects of secretory and membrane protein biogenesis and endoplasmic reticulum quality control.
D T Ng ... P Walter
J Cell Biol 2000 Jul; 150(1)77-88.

Score: 0.707
The unfolded protein response modulates toxicity of the expanded glutamine androgen receptor.
Monzy Thomas ... Andrew P Lieberman
J Biol Chem 2005 Jun; 280(22)21264-71.

Score: 0.707
XBP-1 regulates a subset of endoplasmic reticulum resident chaperone genes in the unfolded protein response.
Ann-Hwee Lee ... Laurie H Glimcher
Mol Cell Biol 2003 Nov; 23(21)7448-59.

Score: 0.706
The protein kinase/endoribonuclease IRE1alpha that signals the unfolded protein response has a luminal N-terminal ligand-independent dimerization domain.
Chuan Yin Liu ... Randal J Kaufman
J Biol Chem 2002 May; 277(21)18346-56.

Score: 0.704
Transcriptional induction of genes encoding endoplasmic reticulum resident proteins requires a transmembrane protein kinase.
J S Cox ... P Walter
Cell 1993 Jun; 73(6)1197-206.

Score: 0.702
Intracellular signaling from the endoplasmic reticulum to the nucleus: the unfolded protein response in yeast and mammals.
C Patil ... P Walter
Curr Opin Cell Biol 2001 Jun; 13(3)349-55.

Score: 0.701
The cellular response to protein misfolding in the endoplasmic reticulum.
A A Welihinda ... R J Kaufman
Gene Expr 1999 ; 7(4-6)293-300.

Score: 0.699
Characterization of mouse Ire1 alpha: cloning, mRNA localization in the brain and functional analysis in a neural cell line.
K Miyoshi ... M Tohyama
Brain Res Mol Brain Res 2000 Dec; 85(1-2)68-76.

Score: 0.697
Endoplasmic reticulum stress and the making of a professional secretory cell.
Eelco van Anken ... Ineke Braakman
Crit Rev Biochem Mol Biol 2005 Sep-Oct; 40(5)269-83.

Score: 0.695
The unfolded protein response is activated in Alzheimer's disease.
J J M Hoozemans ... W Scheper
Acta Neuropathol (Berl) 2005 Aug; 110(2)165-72.

Score: 0.694
Identification of mitogen-activated protein kinase signaling pathways that confer resistance to endoplasmic reticulum stress in Saccharomyces cerevisiae.
Yijun Chen ... Albert C Koong
Mol Cancer Res 2005 Dec; 3(12)669-77.

Score: 0.691
IRE1-mediated unconventional mRNA splicing and S2P-mediated ATF6 cleavage merge to regulate XBP1 in signaling the unfolded protein response.
Kyungho Lee ... Randal J Kaufman
Genes Dev 2002 Feb; 16(4)452-66.

Score: 0.686
Hepatitis C virus envelope proteins regulate CHOP via induction of the unfolded protein response.
Shiu-Wan Chan ... Philip Anthony Egan
FASEB J 2005 Sep; 19(11)1510-2.

Score: 0.685
Hepatitis C virus non-structural protein NS4B can modulate an unfolded protein response.
Yi Zheng ... Linbai Ye
J Microbiol 2005 Dec; 43(6)529-36.

Score: 0.683
The sarco/endoplasmic reticulum calcium-ATPase 2b is an endoplasmic reticulum stress-inducible protein.
C Caspersen ... M Treiman
J Biol Chem 2000 Jul; 275(29)22363-72.

Score: 0.683
Signalling from endoplasmic reticulum to nucleus: transcription factor with a basic-leucine zipper motif is required for the unfolded protein-response pathway.
K Mori ... T Yura
Genes Cells 1996 Sep; 1(9)803-17.

Score: 0.680
Spreading depression activates unfolded protein response.
Edda Schneeloch ... Wulf Paschen
Neurosci Lett 2004 Sep; 368(1)37-40.

Score: 0.678
Endoplasmic reticulum stress and unfolded protein response in inclusion body myositis muscle.
Gaetano Vattemi ... Valerie Askanas
Am J Pathol 2004 Jan; 164(1)1-7.

Score: 0.678
A genetic link between the unfolded protein response and vesicle formation from the endoplasmic reticulum.
Hironori Higashio ... Kenji Kohno
Biochem Biophys Res Commun 2002 Aug; 296(3)568-74.

Score: 0.678
Endoplasmic reticulum stress-induced mRNA splicing permits synthesis of transcription factor Hac1p/Ern4p that activates the unfolded protein response.
T Kawahara ... K Mori
Mol Biol Cell 1997 Oct; 8(10)1845-62.

Score: 0.674
High ER stress in beta-cells stimulates intracellular degradation of misfolded insulin.
Jenny R Allen ... Fumihiko Urano
Biochem Biophys Res Commun 2004 Nov; 324(1)166-70.

Score: 0.674
Dissociation of Kar2p/BiP from an ER sensory molecule, Ire1p, triggers the unfolded protein response in yeast.
K Okamura ... K Kohno
Biochem Biophys Res Commun 2000 Dec; 279(2)445-50.

Score: 0.674
A 22 bp cis-acting element is necessary and sufficient for the induction of the yeast KAR2 (BiP) gene by unfolded proteins.
K Mori ... J F Sambrook
EMBO J 1992 Jul; 11(7)2583-93.

Score: 0.671
IRE1- and HAC1-independent transcriptional regulation in the unfolded protein response of yeast.
Martin Schröder ... Randal J Kaufman
Mol Microbiol 2003 Aug; 49(3)591-606.

Score: 0.670
IRE1 and efferent signaling from the endoplasmic reticulum.
F Urano ... D Ron
J Cell Sci 2000 Nov; 113 Pt 21()3697-702.

Score: 0.669
The unfolded protein response coordinates the production of endoplasmic reticulum protein and endoplasmic reticulum membrane.
J S Cox ... P Walter
Mol Biol Cell 1997 Sep; 8(9)1805-14.

Score: 0.667
Caspase-12 and ER-stress-mediated apoptosis: the story so far.
Eva Szegezdi ... Afshin Samali
Ann N Y Acad Sci 2003 Dec; 1010()186-94.

Score: 0.664
Gene expression in response to endoplasmic reticulum stress in Arabidopsis thaliana.
Shinya Kamauchi ... Reiko Urade
FEBS J 2005 Jul; 272(13)3461-76.

Score: 0.663
Amino acid limitation regulates CHOP expression through a specific pathway independent of the unfolded protein response.
C Jousse ... P Fafournoux
FEBS Lett 1999 Apr; 448(2-3)211-6.

Score: 0.660
Degradation of misfolded proteins prevents ER-derived oxidative stress and cell death.
Cole M Haynes ... Antony A Cooper
Mol Cell 2004 Sep; 15(5)767-76.

Score: 0.658
Salsolinol causing parkinsonism activates endoplasmic reticulum-stress signaling pathways in human dopaminergic SK-N-SH cells.
Mohsen Kheradpezhouh ... Manuchair Ebadi
Neurosignals 2003 Nov-Dec; 12(6)315-24.

Score: 0.656
Abstract:
{\rtf1\mac\ansicpg10000\cocoartf824\cocoasubrtf350
{\fonttbl\f0\froman\fcharset77 Times-Roman;}
{\colortbl;\red255\green255\blue255;}
\paperw11900\paperh16840\margl1440\margr1440\vieww9000\viewh8400\viewkind0
\deftab720
\pard\pardeftab720\ri720

\f0\fs24 \cf0 How do eukaryotic cells regulate the abundance of organelles, in particular employ unfolded protein response (UPR) to fine-tune the secretory capacity, and hence the volume of the endoplasmic reticulum (ER), where secretory proteins fold. How do the UPR transducers Ire1 and PERK sense unfolded proteins and/or ER stress. How does it relate to ER storage disease, cancer, diabetes and congenital disorders. What is the link between UPR and homeostasis.}
Keywords extracted from the abstract: [ eliminated words list ]
Count Word
6.000 \cf0
6.000 \deftab720
6.000 \f0\fs24
6.000 \paperw11900\paperh16840\margl1440\margr1440\vieww9000\viewh8400\viewkind0
6.000 \pard\pardeftab720\ri720
6.000 \red255\green255\blue255
2.501 abundance
0.968 cancer
1.649 capacity
0.616 cells
1.662 congenital
1.387 diabetes
0.796 disease
1.195 disorders
3.133 employ
2.262 endoplasmic
5.430 er
2.340 eukaryotic
4.464 fine-tune
2.449 fold
2.257 homeostasis
4.369 ire1
2.298 link
2.650 organelles
1.752 particular
4.150 perk
0.701 protein
1.445 proteins
2.161 regulate
2.659 relate
Count Word
1.024 response
2.089 reticulum
4.119 secretory
2.467 sense
2.054 storage
1.398 stress
6.000 times-roman
2.887 transducers
6.375 unfolded
9.136 upr
1.456 volume
6.000 {\colortbl
6.000 {\fonttbl\f0\froman\fcharset77
6.000 {\rtf1\mac\ansicpg10000\cocoartf824\cocoasubrtf350
RIC Statistics:
Extraction Method: Keyword Count with Lexical Variants Added
Eliminated words list: MedlinePlus List
Similarity Method: Weighted keyword count
Weighting Method: Term Frequency * Inverse Document Frequency
Database: Medline abstracts (1967 - Present)
Publication Type: All
Score Calculation Method: Cosine Similarity Method
Sort by: Score
Submission date and time: 5-26-2006, 11:44:39
Computation time: 00:00:12
Last updated: Friday, 26-May-2006 11:44:51 CDT